Or we'd create a migration script..
the problem with customization is that it is difficult to plan how exactly the custom files have been organized, and the migration script might do more harm than good.
Some might have copied the key multiple time, other might have link it, some might have only one key for all the domain configured, some one key per domains, some other might have a mix of dedicated keys and shared keys.
Hence, the current situation might be the wiser approach.