As I mentioned in the above thread, corruption is a possibility, but by using the rate-limiting option of rsync (I have it set to 3.5MB/s, just pulled that number out of my a$$), I have not had a corrupted hard disk in over a year with nightly backups. I guess if you can hold out for SME7 to go gold, all of those USB issues should be fixed.
I have not investigated automount, as I leave the USB drive mounted at all times so I can restore files if needed. However, there are no problems plugging and unplugging USB devices while the system is powered up, as long as you unmount the disks before you remove them. There should be no problems with having your backup script unmount the drives after a backup.
Maybe you could write a server-manager panel to mount and unmount the drives. I haven't tried this because I don't need it and I haven't a clue about how to do it on SME. Writing the event and action scripts is simple enough, but how do you integrate that with a manager panel? Maybe someone out there with knowledge on how to it could do us a favor and give us a short tutorial?